Scaffold Ga0325405_1004549

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1004549
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14124
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001798	Metagenome	632	Y
F005406	Metagenome	401	Y
F091083	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_10045491	F001798	N/A	VDLVDSSTQALWLDEMTLIHSEFGNVFLMKVVGNHLIFLTIKFQSIWITRARDMAKILSSAVGGRGG
Ga0325405_10045492	F005406	GGA	MDQVKSFTTLPNGKVIEKPVLEPCDKEDELVSEGKEKVKLEHCKEETDSPPALPFPYVMTKQKKVNHNSEIFETFK
Ga0325405_10045496	F091083	N/A	MRQMKSIARHQQTVAASSSSSEKDIFLCADHDDASAPTCDAASFSTISQRRGSVPSQRGQFTRKYQA