Scaffold Ga0325405_1002511

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1002511
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18881
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (39.13%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F006830	Metagenome	363	Y
F038486	Metagenome	165	Y
F038922	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100251116	F006830	N/A	MDTTLEKLKKYFPTLPQNAITKIYRARCARLRLLMNYGIPEDIR
Ga0325405_10025112	F038486	AGG	MEDSTDSSSVNTIPFPTRTILDGEIIQTYDMGTHLKKAINADNSIPMDFNPNRIIKQDSPLHSQTPMLWGRHPVMIFVR
Ga0325405_100251122	F038922	N/A	MGSTPFLLYTILCVVFEARVINLFDCDIATNFGAVAGEVILVDSCACTVIFICCDSKKKEKQNFCLQRCYSLAAVVLFKTEFLVELGIGLLFPEGK
Ga0325405_10025114	F000510	N/A	MLFRLKQKKTEKYQAKLKKIRKLSREQTLVASTHPPTEIRTDHGNETSIYIMNIYLFLTLLN