NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1002052

Scaffold Ga0325405_1002052


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1002052 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20727
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (26.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Salix(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002024Metagenome603Y
F003967Metagenome459Y
F029605Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_100205219F003967N/AMFQNLISRYGSRLRDFWYKSQKKAKKTARDKCLQGWNDVAVWRYFKSIYIPTYIWPRYLEHVTSERFTRRSQFGADNRNQPIHGLVTTHTGGFVPFAANAKQMVRLI
Ga0325405_100205221F029605N/AMEIIKHKSCNNRVKLLIIPTYSITNYELNSILTITIQQINQLLWQHNNKIYSINSKNKTL
Ga0325405_100205222F002024N/AMKIIKHKSCNNRINLLIIPTYSITNYELNSTLTITIQQIIQLL

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