NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325405_1001089

Scaffold Ga0325405_1001089


Overview

Basic Information
Taxon OID3300032389 Open in IMG/M
Scaffold IDGa0325405_1001089 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27364
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (35.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016904Metagenome243Y
F027067Metagenome195Y
F030302Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0325405_10010891F030302N/AMPGTDKSTFAKKYSTKRLKVCHRCARWTCNAQCLSLEMVSINREDKIQFINDDLSKESLDNLLLNLETHPSRDVHRAIHDLWPQFHKEHARHSLGNLTKKDHVCQFLRKLDW
Ga0325405_100108915F016904N/AMLLTKPKDTRFHKRRLKSNLNFLRLFLVDQFMGLMEGSITGMKDCSWSINCSAVVVDIMICYAEDVRNFCSTT
Ga0325405_10010893F027067GGAMGKALNGSFDAGLLEFGLIMQISEGIDAVYGQNNK

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