Scaffold Ga0325405_1000158

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000158
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 64271
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (47.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028370	Metagenome	191	Y
F038522	Metagenome	165	Y
F094629	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_10001582	F028370	N/A	VFCVNGKADESGQFRLLTFKEILDRRMKELGSSSFIEIVVLDVY
Ga0325405_10001584	F038522	N/A	MQIKIIIEHKYSYSHQKQICSYVKKEKREFLYLFLQIKRKTPKFQEPIPD
Ga0325405_100015869	F094629	GGGGG	MQIRKIIEHKYSYSHQNSAAIVRKEKREFLYPFLQNQERNTKISRTHPRLRVYKWNKHLWARD
Ga0325405_100015870	F028370	N/A	VLCVNGKVDESGQFRLLTLRGISSRRMNELGSGSFKEIVVSDVD