Scaffold Ga0325405_1000031

Overview

Basic Information

• Taxon OID: 3300032389
• Scaffold ID: Ga0325405_1000031
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 119663
• Total Scaffold Genes: 120
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 71 (59.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012641	Metagenome	278	Y
F012990	Metagenome	275	Y
F026216	Metagenome	198	Y
F037802	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325405_100003134	F026216	N/A	MCSMYENIDDTAFIERKQYSVIMLKVNFLGLGLLLFFLFSLFFNIYTYNLKHNASLTHVMSFRLMTPRSVGLRALGVETPLRA
Ga0325405_100003158	F037802	GGA	MLCVSEKVDESRQIRLLIFRENSSGRMRELGSGYFIEIVVVGVE
Ga0325405_100003165	F012641	N/A	MDFLNTTKIIFLHFWILQHVCKTPKGIAQYSKKYKNLILGGIHLLFTANVWIKKSLKDEYPKYY
Ga0325405_100003179	F012990	GGAG	MEGAVSLDNSTGAEIHGDGIVCLDCFVEASSHNISLDDLSIRDCTCWKRDHIYSGAVR