NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325400_1077546

Scaffold Ga0325400_1077546


Overview

Basic Information
Taxon OID3300032374 Open in IMG/M
Scaffold IDGa0325400_1077546 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2395
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000510Metagenome1067Y
F048069Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0325400_10775463F048069N/AVLLFLFAVIVISFSEKKIEFLFAAVLFITAAVLFKIDFLVELGISLLFPEGKRCSK
Ga0325400_10775464F000510N/AMLDDMQFGGVWTLSKLKQKKTANYQTKFNKIRKLSREQTLVTSTHLPTEIRTDHGNETSIYILNIYLF

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