Scaffold Ga0316204_10870690

Overview

Basic Information

• Taxon OID: 3300032373
• Scaffold ID: Ga0316204_10870690
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 643
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006383	Metagenome	374	Y
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316204_108706901	F006383	GGAGG	MLNSTDKMWSVQQPGTLLRARSSHQYGKLALVLQEAYAGPTPSNGYPPRKYVKMQWLATGERFEEMLTNAHNCFDIVGS
Ga0316204_108706902	F021674	GGTGG	MERETYNTRLKTNPEDIPLGSLLRVKKHCRKNITIRNNGEYGILATCANGKYITHDVVFPNGTRCIYMPLNWEVVSYAK
Ga0316204_108706903	F015346	N/A	LYNVGELVAVASNRVLGIITRSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLVEL