Scaffold Ga0316204_10293828

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0316204_10293828

Scaffold Ga0316204_10293828

Overview

Basic Information
Taxon OID	3300032373 Open in IMG/M
Scaffold ID	Ga0316204_10293828 Open in IMG/M
Source Dataset Name	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1262
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Maine
Coordinates	Lat. (^o)	43.8603	Long. (^o)	-69.5781	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F030081	Metagenome / Metatranscriptome	186	N
F051538	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0316204_102938281	F030081	GAG	MTTNNLWFWMQNRKEEPVREGIPVYAKQYEEGYVSKVEIVHQTEISCSRGHPTHYMTIRPVYDTYGYKEPGRIVCEKCGTLYRLMEPTLEE
Ga0316204_102938283	F051538	N/A	MTASANPYAEAIKIHSAVYSYIEKVSPTLYMLNACNSDLYVPTLMYSVEQTYNLVPSNVKSYQIVNTIWKTQEHTIMDPRLEASLIMVKQGLRNPETVTEVQAACDALDSYVKTRFYWEHSTQG

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