Scaffold Ga0316204_10054594

Overview

Basic Information

• Taxon OID: 3300032373
• Scaffold ID: Ga0316204_10054594
• Source Dataset Name: Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3665
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat → Sediment Chemolithoautotrophic Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Maine
• Coordinates
  • Lat. (^o): 43.8603
  • Long. (^o): -69.5781

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F066845	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0316204_100545941	F066845	AGGA	MLNNRKKAIAMHNAGKKRFADIFTGCLAHGTLKQTQKKKACFKLKKD
Ga0316204_1005459410	F019151	AGGA	MIIANARARDGLELFDNDGVQAFEMKNETLKMCADEDGALWNSVRSLTLRDAEGKALFSLSWSETGVCGSLHDDELTIEIEEEF
Ga0316204_100545948	F024570	GAG	MAYVAYEIRQTKETATGTRHLVRCNRLGKWAICSWVGSTGSAMGNPECQGNYEYVMKKWNKIQKKRQPVT