NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10179683

Scaffold Ga0315334_10179683


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10179683 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1702
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016734Metagenome / Metatranscriptome245Y
F036473Metagenome / Metatranscriptome170Y

Sequences

Protein IDFamilyRBSSequence
Ga0315334_101796833F036473AGGAMITSLANLKAILLDKVCEVKFVRRNPKPGRPATRRMLCTNNVQLLNSVEGRTTLNYVPPREAPNYNPNQENLIVVWDILMQGYRTINCDTVDLISTLEADETFWAYLNEKIAPMSAGEKMGFMNT
Ga0315334_101796834F016734N/AMNEKKVKQKYEQALDKLDLTDSEREAFDHDAKRSLIDLDTYQETDTFSLQGYKLSKVMDDIVLAQYVDLSNDGRSVIRNGIHIPLSQVKRTWRLARVVLAGPLCKFTSPGDVVCFPDDKGIKVDNLRVVGYDRSLRDCLFLNEQRFFGICQDLDDDDNQPSKS

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