Scaffold Ga0315334_10142244

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10142244
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1896
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023368	Metagenome / Metatranscriptome	210	Y
F024328	Metagenome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_101422445	F023368	AGGAGG	MHKYNKSTTKYKDVPMEDKIFSYLDKQDTNNAETLCMLLAHLSMPTMCCSWVSEEHFNNLLEEYKIDITPYVKDDDRITTSIKSEIADEMFNLVSNGKYKKRNLIKVLREKFKDVNAGVIHRLIKKNLSLRILEIDRTYKTKPYVIKGKYYIGG
Ga0315334_101422446	F024328	AGGAGG	MNIRRIEEAILMAIKIESQLPFSEQGYKDLMKFVEKLFKEYREGEXKQ