Scaffold Ga0315334_10058170

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10058170
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2830
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000567	Metagenome / Metatranscriptome	1020	Y
F009536	Metagenome / Metatranscriptome	316	Y
F013896	Metagenome / Metatranscriptome	267	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_100581702	F009536	N/A	MEKDLMKQALELMPGKLKEEIKSNLENPKSYTRLFVKVLDEIDRMKVVLPKFTTLKNSILKINKKNHSKMTDEMKHHVPQTQSTLSVKDIEYWLQTAKKEDQLIYYTGGTFDRKSVKDESVFRKAQNLAMDYDNIPFKNKKYQYRGSVKGEWGCTYKNIITLVQKRVAKEQRDKMWDEEKKSYIPGNIISYPIYNYIMIKI
Ga0315334_100581703	F000567	N/A	MKKKLLQITQKITTWHVKLFEYLTLKSKTSIFFTWLLVFICLYEIFEHIVIPLALIWWGF
Ga0315334_100581704	F013896	GGTGG	MICDKCNGNGFTLVKGETVQCKKCLSSGELPETLTPPRYPAEHLADIYQALYAESLKLSETHDPGMVAASLMAIGSRIYKTILTTEDYDRIMERILKTDVEPFKKETLQ