NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10026535

Scaffold Ga0315334_10026535


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10026535 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4000
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042023Metagenome / Metatranscriptome159Y
F043614Metagenome / Metatranscriptome156Y
F045140Metagenome / Metatranscriptome153Y
F080506Metagenome / Metatranscriptome115N
F087296Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0315334_1002653512F042023GAGMNDMSLEKRVFFCFLILLIFLSSGCHTTQFEWMPNRDGDDPDVNRVALPDRNELGGIEVDVLKVSF
Ga0315334_100265352F080506N/AMKLEEAVRIGKGVDLTTIEECVNNIHSFSPQLFPYSKINEELDELYEDYNEFKANPDTWMEALCGMKA
Ga0315334_100265354F087296N/AMTSPYYDNLRKMTTQLEIQRESAAVEYSEWVLKWQEIESDMTFNVPWKKLYERVGLTKTLSGPSLGRWSIAEGKFWAEYLRFVTEVYHYGGTLEELKRRITDQRIYNSRTYKTRRF
Ga0315334_100265356F045140GAGMIRLLTVFLLSASIAQAVSLEIKLAYQKVTEKGRPYGSPGGIYFEIKDIDPFLPYWVQYSHDFKVWKDLYNFGSFGDNSTSPLFHWYELPPEKCFFRIIQKW
Ga0315334_100265359F043614GGAMSLIDQREKIIIEKMKNITLTFERKGSTVWSDGDDYYATYVHEPTKSKWKILWQYSQGGEHIGSIRKWVKQDDPPTWETCMAPRNKWEYQGEVFRFKKLEQGLKVEIDLLESDETYESVSRAMSTPPPSLESEPLVPMNFGLPLA
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