Scaffold Ga0315334_10024512

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10024512
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4143
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014805	Metagenome / Metatranscriptome	260	Y
F021015	Metagenome / Metatranscriptome	221	N
F034712	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_100245122	F014805	AGGAG	MGLYKSITTDAGSTLDYWDYGIVEVNTSAPTADQQNANVNIWGYTDVAYYNAGAPPVERWNTYSCGMVSGTDHYPYADLTGVSGEVTGTQRLGPALPANWSWTANSVSGWMADSSDIRNGAQTWALNCVPAFSGATVTGQVYPD
Ga0315334_100245123	F021015	N/A	MGLNLNYTKPDGQQAHYWKISRVEDWFQGTEGTDPGYMANINSLGFTNETYRNAGAPSVDGNMFNCPYASGTDLYSYMDLTGVSGEVTGEKRLGPPLPAGWDWAENGVSGWMQRNDDIRIGAYTWIKNCVPFFSGATDALTAGE
Ga0315334_100245127	F034712	N/A	MRDKTRETAEAIDQTRLDMAGVEGVLTWVQHLADRNKDGDMDDIKRIVKEQRAILTRLRVGLNKARFDNTYSPLGFELESKDANPWA