Scaffold Ga0315334

Basic Information
Taxon OID	3300032360 Open in IMG/M
Scaffold ID	Ga0315334_10023555 Open in IMG/M
Source Dataset Name	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032360 Open in IMG/M

Scaffold ID

Ga0315334_10023555 Open in IMG/M

Source Dataset Name

Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4217
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

4217

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	36.7468	Long. (^o)	-122.0193	Alt. (m)	Depth (m)	500
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

36.7468

Long. (^o)

-122.0193

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_100235552	F025142	GGA	MAGSIDMEGRAIEFKVKVGSRATVQLTVADSSGTAKDLSNTVTFATGLWKVWKPGGTLIINGAVTFTTRASGLISYPLSATDTVLANAGRWEGEVELLDSNGVISEQTSSFTFMIEESY
Ga0315334_100235554	F064802	N/A	MACAPMPPFVLQMSVRHMKTEESIRDLILFTKEKLLHENVDQTGMLPQTLIPPLLIDIPDDERRGIIRALRWVLADEDIFQRE
Ga0315334_100235555	F054103	N/A	MKIYFNANNKYTLEALERCGVRNVLLSHRYSYANIGKYSNKFDSIFMVPGTKGKVSGGRPDKYREFLKKKKEYYEYATQFDVLYKMDETLKYLKKEREDGIDWTLPILQENYLQHLSKLKPKTGDYICLGEVHGKLETEDQIRKLPRNVKYHGLAKGKYIEKRPFESLDTSGWISAAMSRKTEVWSGNSTFSLFFGWKGKGMKSQTASVLEKYKQNLEIVGVRSSSVLEDDYSSLLKLPIAVLYMPMCKTLGIYDMNFKQ
Ga0315334_100235556	F001066	N/A	MVEDLFKIEAVGNKNLVKENKHKTISPFNSAKHLKTANVPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIRNDFINLINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLGIVKSINDLNSKIVVTEKTEYRQGDIENIFRQIKAQRTG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0315334_10023555

Overview

Ecosystem & Geography

Associated Families

Sequences