Scaffold Ga0315334_10022375

Overview

Basic Information

• Taxon OID: 3300032360
• Scaffold ID: Ga0315334_10022375
• Source Dataset Name: Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4315
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.7468
  • Long. (^o): -122.0193
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011494	Metagenome / Metatranscriptome	290	Y
F047110	Metagenome	150	Y
F077389	Metagenome / Metatranscriptome	117	Y
F081424	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0315334_100223756	F081424	N/A	MRDRIELEEVFEADPRARVEFNAVCDQWQSEAIIAQDKAACECDICADTETCWCKPFESCSLCFGKA
Ga0315334_100223757	F011494	N/A	MRKYSVVNEEGVVEEFIQLVGEADHAALNDAIELAGRAGEDVVEHLADGSRVVVWELGGEEPWEGEDRFADGDALASAGFGTDEDYGCFDAGDEW
Ga0315334_100223758	F047110	N/A	MKNNKMKTIVSMNWRIKDLILNKLSFEKWHLDVFGAAASKKVLNKIKEKESELKQMKEAVISAARDEAAA
Ga0315334_100223759	F077389	N/A	MKEIKNYKEKMLRYYYAPVIGFALVLAIVCGFVIGFDEVWRYWRVVALNF