NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315334_10001253

Scaffold Ga0315334_10001253


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10001253 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15609
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028316Metagenome / Metatranscriptome192Y
F033600Metagenome / Metatranscriptome177Y
F072246Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0315334_1000125312F028316N/AMKRSMPKRRNFDNLLKSSINAAESVEIEDQDMSFINDYLAEHLKSFILLGYDLKGESVIIISGKTPQDYDAIETLLRRINDINFFNNVQEEKNSQTNE
Ga0315334_1000125320F033600N/AMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLADIAKASPETYNQVKAELVPFPGDHLIEQLGSAYKNVSDANYLLNQLFENPSTHIDEKIVKSATLKLQKIQDLIKSVSEDLDHDETDS
Ga0315334_1000125322F072246N/AMTNNSTIKPTTKDYSQLARWLCLFEAVNIISIKAEKIGHTTDCLKPIPINKYIRERYPSVLKDVEYEFNNNLHTHRH

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