NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0315334_10000100

Scaffold Ga0315334_10000100


Overview

Basic Information
Taxon OID3300032360 Open in IMG/M
Scaffold IDGa0315334_10000100 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)55887
Total Scaffold Genes97 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)60 (61.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)500
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004880Metagenome / Metatranscriptome420Y
F083233Metagenome113Y
F099846Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0315334_1000010018F099846GGAGMSTYLGLRSIDELVNYTYNRTPDEILKAGFSTTDPGAGGNYNPLFGAMAWANFNMEANIFAALPKYVWDFSGWRIFKSKAPNLTTAAGARDGLGGTIEGGAIAPAIKPAVQEITVKPKTLQYVFEASELLEQLVDNSRDDNYGSLAQQRVYASDQFKERVNLMLTAIPTDVAATNALERLNLESLDVIVSSYAEQQFEAHSVLTDLYNPWKGANGAGVDRNASAATWDSTVKSPSGTIGTADVLTDAVLRDTLADIRIAAGKEPTVMIGGQDTYSEVQSIYMNAYRIQNTADLRTEFSVGVNGVDTFTGTGAGLHISTIYGLPFIPSKDTTQSAEGSVDDLFILNTSADKNAPNKPLLGMQVLKPIVYYEAGKRQQGYPFINEAFTDRALYNMLGETTCRNFKAQAKIRDIASGI
Ga0315334_1000010048F004880AGGAGMSQEYYDHLNEGEKYSCDKCQVVNLSAIEYDSYIVNHYHYCEPCWNYVHLKKGTCDSCGSTMTNRNEYASIFITCGCGKEVELKW
Ga0315334_1000010053F083233N/AMSDISTREHKHIQMTKATFHSETLAPIKTNGIAGKPRFSVEPLIYIAGVGWEIVDPMASGNEFMIAFYNYVRIKELMGYEHTGHTSAEIKTTLENMWGEKIE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.