Scaffold Ga0308414_1001008

Overview

Basic Information

• Taxon OID: 3300032356
• Scaffold ID: Ga0308414_1001008
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS50
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18389
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F005028	Metagenome / Metatranscriptome	414	Y
F005631	Metagenome / Metatranscriptome	394	N
F006252	Metagenome / Metatranscriptome	377	Y
F008499	Metagenome / Metatranscriptome	332	Y
F025895	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308414_100100819	F005631	GGAG	MRVNVSVDLDNALRKLLPRTPQIEAALDAGAAAAHSVMQVYPSPPAGSRYRRTGNLRQKLRIKKLSKTSRVVENTASYARFVYGMPQAWMHRGRWASLKDAAEEAKKEAIAVLKEMGR
Ga0308414_10010083	F006252	AGGAGG	MKSFEEQAAFGLPYERAIAQAAALLLYPQCFDLTLVRLGKYAPLDFLLLDGVLPVAALEVKRRAVRSDTYSTTILPQSVFDAATRLAIPTYAAILFIDGLAIFDVVRTPSNVRWLRTRRGTVRKHREYDIKERLVKVETLHQRPKDSD
Ga0308414_10010086	F004307	AGGA	MFKELIDNGKHSERPALNGAYVGYFLGVKERQRATFETRLSAEPELEDVFVFEFEIEDAEFDAPVRVSKWVRKPKRLTHPSNGKATNLYKTLAALYGVALMTDKQLDDAEEFVQTAAVGREYQLTLETKPSGWVEIVHIAPVRKAHNRKIREDEEVPF
Ga0308414_10010087	F008499	AGGA	MRKSRSEPRWKRKERDAIKALQAIFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARKKMLTKQTIEALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVEREWVMMPRRVLEEIVGKERKDEGITDA
Ga0308414_10010088	F005028	GAGG	MRDDDLHAAMAFFAARLRGAEVTEAGLRRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIRAVDPEGDSEDVTLAVADLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQMLAKVLDKRGEVDIQKGRMGYE
Ga0308414_10010089	F025895	AGGA	MSDLIAWIVAGGVILALVNSNVADGLLNALDLSDNLKRAVDWARGVRGVPAGVASVCFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFTLFVTLLPTLIELATVGLMQRDIKALQWMLYFFVFFDIVTDYREAVELVEVWQRGELFAPLPGALQGTTMVLAKVGWTFAASFAFEFLAILFAVTALLLAANVRATGGGGR