Scaffold Ga0325401_1050855

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0325401_1050855

Scaffold Ga0325401_1050855

Overview

Basic Information
Taxon OID	3300032355 Open in IMG/M
Scaffold ID	Ga0325401_1050855 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3162
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016904	Metagenome	243	Y
F040184	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325401_10508554	F040184	GAG	MQSYHLYVGQLESHTHTHSLSLFIYLFILKKYVYVQVVVIVAHVFPWFYVQERLKRPLWVGDRLPIQFS
Ga0325401_10508557	F016904	N/A	MLLIKPKDIRFHKRRLKSNLSFLRLSLVDQFMRLMEGSITGMKDCSWSINCSAVAAEIMICRAEDVRNSCSTA

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