NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325401_1050855

Scaffold Ga0325401_1050855


Overview

Basic Information
Taxon OID3300032355 Open in IMG/M
Scaffold IDGa0325401_1050855 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3162
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016904Metagenome243Y
F040184Metagenome162Y

Sequences

Protein IDFamilyRBSSequence
Ga0325401_10508554F040184GAGMQSYHLYVGQLESHTHTHSLSLFIYLFILKKYVYVQVVVIVAHVFPWFYVQERLKRPLWVGDRLPIQFS
Ga0325401_10508557F016904N/AMLLIKPKDIRFHKRRLKSNLSFLRLSLVDQFMRLMEGSITGMKDCSWSINCSAVAAEIMICRAEDVRNSCSTA

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