Scaffold Ga0325401_1035401

Overview

Basic Information

• Taxon OID: 3300032355
• Scaffold ID: Ga0325401_1035401
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4240
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008251	Metagenome	336	Y
F016904	Metagenome	243	Y
F040184	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325401_10354012	F016904	N/A	MLLIKPKDTRIQKRRLKSNLSILWLSLVDQFMQLIEGSITGMKDCSWSINCSVVATEIMICHAKDVKNSCSTA
Ga0325401_10354014	F040184	GAG	MQSYHLYVGQLESHSLSLSLYLFILKKHVYVQVVVIVAHIFPWFYVQERLKRPLWVEDRLPIQFF
Ga0325401_10354015	F008251	N/A	MDTTLEKLKKYFPALPPNAIAKIYRARCARLRLLMNHGILEDILWLIEAKVRLSGESSNSFISYMPKTGKSNFAKKRCAKRLKLYHRCAKWTCNAQCRSLGMVSINRKDKIQFIKEGLSKGSLDNLLLTLETHLSGDVHRAIHDL