Scaffold Ga0325401_1025071

Overview

Basic Information

• Taxon OID: 3300032355
• Scaffold ID: Ga0325401_1025071
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5421
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008669	Metagenome	329	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325401_10250712	F008669	GGAG	MPFSMEWMRNRYSMMMRSGRNRLDGRFERVITFDPTVGSRSNFYWSFRMPFCMEWMRNR
Ga0325401_10250716	F008669	N/A	MEWMRNRYSMMMRSGRNRLAGRFERVITFDPTVGSRSNVYWSFRMPFSMLWMRNRFSVMMTCGRTRLE
Ga0325401_10250717	F008669	GGA	MEWMRNRYSVMMRSARGRLDGRFERAITFDTTVGSRSNFYWSFRMPFSMEWMRNRYSVMMRSGRARLDGRLERVITFDPTVGS
Ga0325401_10250718	F008669	GGA	MYWIRNRYSVMMRSARNRLDGRFERVVTFVSTVGSRSKFYWSFWMPFCMEWMRN