NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325401_1002739

Scaffold Ga0325401_1002739


Overview

Basic Information
Taxon OID3300032355 Open in IMG/M
Scaffold IDGa0325401_1002739 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15805
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008669Metagenome329Y

Sequences

Protein IDFamilyRBSSequence
Ga0325401_10027392F008669GGAGMPFCMEWMRNRYSVMKMSGRAMLDGRFQTAIPFDPTVGSRSNFYWSFQMPYSIEWMRNRFSVMIRCGRARLE
Ga0325401_100273925F008669GGAGVPFSMQWMRNRFSVMMRCGRPRLESRLEIGITFDPTVGWQSNFYWSFRMPFSMQWMRNQFSVMMRSGVQGLSDGSRVP
Ga0325401_10027397F008669GGAGMPFSMEWMRNRYSMMMRCGRKRLDRRFERVITFDLTMGSPSNFYWSFQMPFCMEWMRNRYAVMMMSGRARLDGRFERVITFDPTVGSR
Ga0325401_10027399F008669GGAGMPFSMQWMRNRFLVMMRCGCKRLDGRFEIAITFDPTVGSRSTFYWSFPMPFSMEWMRNRYSVMMRSGRARLDERFKGS

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