Scaffold Ga0325401_1001015

Overview

Basic Information

• Taxon OID: 3300032355
• Scaffold ID: Ga0325401_1001015
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22748
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011631	Metagenome	288	Y
F029945	Metagenome	186	Y
F060474	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325401_10010151	F029945	N/A	VRKDKVLSPHDLAFQLIKRKKNFKAKFSTNLVLKEKLTTIIFEGKKTHEKKHCSN
Ga0325401_100101525	F060474	GGA	MFILREDHDLQAKFAFLARKVEALELKKNGQLKYAQDIVCQICETNEHSTNDCPTLPFFKECLHE
Ga0325401_100101528	F011631	AGAAG	MPGLKLKXDALGRKTMYEGALVLVGFIWSLSVLTRLFSLXSDWLSSSTIFSENDEDTLQSLLLNVHDQTLMHV