NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1064169

Scaffold Ga0325403_1064169


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1064169 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2223
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Weissella → Weissella confusa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001358Metagenome715Y
F002589Metagenome545Y
F013053Metagenome274Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_10641692F002589N/AVLGLSTKLYPRVLGLAATSDPRVIFIILIITLNLHDPSLSGFGYNTKPNNIGCGSGCKVV
Ga0325403_10641693F001358N/AVLGLSAKIYPKALGLTATLDPRVIFIILIIILNLHDSSLSESNCNTRSKSLGCGSSCKIV
Ga0325403_10641694F013053N/AMKKKINEEKEKKSKLTGLTLQTRLTHQTWDSCHESLITK

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