Scaffold Ga0325403_1008484

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1008484
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9824
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F006456	Metagenome	372	Y
F083463	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100848410	F083463	N/A	MQIRIIIEHKYSSSHQKQICSYRKERKKGVFVSIFTNQERNTKISRTRPRLRVIGRINTGGQGINKKI
Ga0325403_100848412	F002798	N/A	MVSVNHEDKIQFIKDGLSKESLDNFLLTLKTHPSGDVHCAIHDLWQQFHIEHDRLSLGNLTIKDHVC
Ga0325403_100848413	F006456	N/A	MDTTLEKLKKYFPVVPQNAITKIYHARWARLRLLMNHGIPKDICWLIEAKVRLSGESSNSFISYMLRTSKSTFAKKRCAK