NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1005981

Scaffold Ga0325403_1005981


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1005981 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11535
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (18.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000201Metagenome1621Y
F001798Metagenome632Y
F029605Metagenome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100598110F001798N/AVNLVDSSTQALWLDEMTLIHSEFGKVFFMKVVGHHLIFSPIKFQSIWITRARDMAKIRSSAVGGRGG
Ga0325403_10059817F029605N/AMEIIKHKSCNNRVKLLIIPTYSITNYELNSTLTITIQQIIQLLWQHNNKIYSINSKKKKL
Ga0325403_10059818F029605N/AMEIIKHKSCNNRVKLLIIPTYSITNYKVNSTLTITIQQIIQLLWQHNNKIYSIN
Ga0325403_10059819F000201N/AMPAFKMNIYHKLKLSYIIKSIIIKHALVKELLILQVQNDDIKP

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