Scaffold Ga0325403_1004099

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1004099
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13488
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003381	Metagenome	490	Y
F005804	Metagenome	389	Y
F027727	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100409916	F027727	N/A	MMIVSRVASESIRNINETEDSNKNRNKKMQNHDTTPKYVGYDENELQEMKTTESKRISKVDAKQTRLLRVKSAFGT
Ga0325403_100409918	F005804	N/A	VAIGPITRARAKKLKEALNGLVQNIWSKMDLEGLGIFKEHEGKTLIHLVQVQKEPNLCGTRG
Ga0325403_10040997	F003381	AGGA	VDQPRNTSKDPLHVPNGPMTRSKTKALNALVLNVSTKSELKGPLEYQEETLVYLIHVQEGSNRTLFGP