NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1003747

Scaffold Ga0325403_1003747


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1003747 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13963
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000510Metagenome1067Y
F012842Metagenome277Y
F037802Metagenome167Y
F072898Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_10037473F000510N/AMICNWGGGWTLSRLKQKKIENYQTKFNKIRKLSREQTLVASTHPPIEIKTDHGNKTSIYILNIYLFLTLVS
Ga0325403_10037477F012842N/AMIVHRCTRIHLKDCGGWIIVMGHRVLLITQHLFREIIVQAVLGVHAGGVKIKIFFIQM
Ga0325403_10037478F072898N/AMVAEGENRQQRRLSRSVFSQIFSSLDISQTGTDIETPYGDNVHDMDENNIFEYRADPTMEGGVIAVS
Ga0325403_10037479F037802N/AMLCVNGKVDESGQIRLLTFGENLSRRMRELGSSFFIVMVVLDVS

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