NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1003521

Scaffold Ga0325403_1003521


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1003521 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14320
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046103Metagenome151Y
F079394Metagenome116Y
F088134Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100352121F079394AGGAMDWLSVLKTKPKGRVKLVQDENEDTSVRDEVFQISELVEPYRFAPSINLEENLNFRVFDDSLVDVDAEE
Ga0325403_100352124F046103AGGAGLRERYGDDPLTHPEFDPYLWMEVGASGGPDKNRVYGLSNTMGENLWAACNVSIVGSSQSVLSTQSKEFVALQQHTAQLTEKYDHLSVEYAQQK
Ga0325403_10035213F088134N/AMDRKLRNRPTKFMNSGRPKSVIFKFKIWPQKRSQNLFCNPVQTLLRILPIAGVLEGKMKLQIPTFMKTTCSNSDFNNNISSRQKLEGYPLRPPEALLSILAIS

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