Scaffold Ga0325403_1002338

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1002338
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16681
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003967	Metagenome	459	Y
F029605	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_10023382	F029605	N/A	MEIIKHKSCNNRLKLLIIPTYSITNYELNSTLTITIQQIIQLLWQQNNKIYSINSKKNLD
Ga0325403_10023383	F029605	N/A	MEIIKHKSCNNRVKLLIIPTYSITNYKVNSTLTITIQQIIQLLWQYNNKIYSINSKKNLD
Ga0325403_10023384	F029605	N/A	MEIIKHKSCNNRLKLLIIPTYSITNYELNSTLTITIQQIIQLLWQHNNKIYSINSKKKL
Ga0325403_10023385	F029605	N/A	MKIIKHKSCNNRVKLLIIPTYSITNYKVNSTLTITIQQIIQLLWQYNNKIYSINSKKNLD
Ga0325403_10023386	F029605	N/A	MEIIKHKSCNNRVKLLIIPTYSITNYKVNSTLTITIQQIIQLLWQHNNKIYSKNSKK
Ga0325403_10023387	F029605	N/A	MEIIKHKSCNNRVKLIIIPTYSIINYKVNSTLTITIQQIIQLLWQHNNKIYSINSKKI
Ga0325403_10023388	F003967	AGCAGG	VIFSMNHKKRQKTIARDKGLQGWNDVAVWRDFKSIYMPTDIWPHYLEHVTFERFTQRSQSRAGNQNRPIHGSVTTHTSGFVPFAANAKRMVRLI