Scaffold Ga0325403_1002123

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0325403_1002123

Scaffold Ga0325403_1002123

Overview

Basic Information
Taxon OID	3300032354 Open in IMG/M
Scaffold ID	Ga0325403_1002123 Open in IMG/M
Source Dataset Name	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	17279
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (56.25%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	32.1348	Long. (^o)	-81.9657	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012990	Metagenome	275	Y
F038922	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_10021236	F038922	AGG	LCNHDITINFGVVSKEVILVDSCAVIFICCDCYLFFLKKKKQNFCLRRYCSFTTAVLFKIDFLVELGIGFCFLKGNDILNKTSRL
Ga0325403_10021238	F012990	GGAG	MEGAVSLDNSTGAEIHGDGIVCLDCLVEAGSHNVSLDDLSIRDCTCWKRDHIYARAVR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.