Scaffold Ga0325403_1000309

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1000309
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31611
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (42.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002798	Metagenome	529	Y
F005804	Metagenome	389	Y
F006456	Metagenome	372	Y
F010370	Metagenome	304	Y
F015421	Metagenome	254	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100030920	F006456	N/A	MDTTLEKLEKYFPALPPNTITRIYYARCARLRLLMNHGIPEDIRWLIEAKVRLSGESFNSFISYMPGTGKNTFAKKRRAKRLKVCHR
Ga0325403_100030921	F002798	N/A	MVSVNCEDKIQFIKDGLSKGSLDNLLLTLETHPNGDVHHAIHDLWPQFHKEHLRHSLGNLTKKDTICQFLRKLEGKPIPDP
Ga0325403_10003095	F010370	N/A	MQNDETTPTYVGYDENKLQEMQTTESKRISKVDAKQTRLQLVKSKSGT
Ga0325403_10003097	F005804	N/A	VPIGPITRARAKKLKESLNGLVQNIWSKMDLEGLGTFKEYEGQPLIHLVQVQEEPNSCGTRG
Ga0325403_10003099	F015421	N/A	MRVWSRTLSGRLCRVSSSFSENIAEEDNQSFHNEKNENNRVRTLRDHMNPTRTSAPSCIVFSPNASHFNFKPGIIQLYLLFMA