NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325403_1000309

Scaffold Ga0325403_1000309


Overview

Basic Information
Taxon OID3300032354 Open in IMG/M
Scaffold IDGa0325403_1000309 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31611
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (42.86%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002798Metagenome529Y
F005804Metagenome389Y
F006456Metagenome372Y
F010370Metagenome304Y
F015421Metagenome254Y

Sequences

Protein IDFamilyRBSSequence
Ga0325403_100030920F006456N/AMDTTLEKLEKYFPALPPNTITRIYYARCARLRLLMNHGIPEDIRWLIEAKVRLSGESFNSFISYMPGTGKNTFAKKRRAKRLKVCHR
Ga0325403_100030921F002798N/AMVSVNCEDKIQFIKDGLSKGSLDNLLLTLETHPNGDVHHAIHDLWPQFHKEHLRHSLGNLTKKDTICQFLRKLEGKPIPDP
Ga0325403_10003095F010370N/AMQNDETTPTYVGYDENKLQEMQTTESKRISKVDAKQTRLQLVKSKSGT
Ga0325403_10003097F005804N/AVPIGPITRARAKKLKESLNGLVQNIWSKMDLEGLGTFKEYEGQPLIHLVQVQEEPNSCGTRG
Ga0325403_10003099F015421N/AMRVWSRTLSGRLCRVSSSFSENIAEEDNQSFHNEKNENNRVRTLRDHMNPTRTSAPSCIVFSPNASHFNFKPGIIQLYLLFMA

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