Scaffold Ga0325403_1000258

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1000258
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33266
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000433	Metagenome	1147	Y
F000510	Metagenome	1067	Y
F038922	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100025825	F000510	N/A	MPDDMQFGGVWTLSMLKQKKTENYQTKFNKIRKLSREQTLVASTHPPTEIRTDHGNETSIYILNIYLFLTLVS
Ga0325403_100025828	F038922	AGG	LCNRDIAINFGVIAREEILVDSCAVIFICCDCYLFCFKKMKQNFCLQRYCSYIAAVLFKTDFLVELELGLLFPKGKQHSEQD
Ga0325403_10002586	F000433	N/A	MLFQFELNQHLFFKLSPLFLFSLSIVKHINKSFKLWDMPAFKISVYHKLKISYVIRLVIIKHAYVREFNDTLNAI