Scaffold Ga0325403_1000227

Overview

Basic Information

• Taxon OID: 3300032354
• Scaffold ID: Ga0325403_1000227
• Source Dataset Name: Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34607
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (53.06%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 32.1348
  • Long. (^o): -81.9657

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000510	Metagenome	1067	Y
F012990	Metagenome	275	Y
F053678	Metagenome	140	Y
F069516	Metagenome	123	N
F094629	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0325403_100022712	F012990	GGAG	MERVVLLENSVGSEIHGDGTVGLDCLVEMSSHNISLDDLSIRDCTCWKRDHIYVGPVR
Ga0325403_100022716	F000510	N/A	MLDDMQFRGGVWTLSRLKQKKTENYRTKFNKIRKLLREQTLVASKHPPIEIKTDHGNKTSIYILNIYLFLTLVS
Ga0325403_100022727	F053678	GGTGG	MCNGTFEDKDPDEAMEYLDLLAENAQNWNTTGTYEAPSKTQPHTSSGGMYNLREDHDLMKQWNTWTC
Ga0325403_100022728	F094629	GGGGG	MQIRKIIEHKYSYSHQKSGAIIKKEKREFLYPFLQNQERNTKISRTHPRLRVCRWNKHLWARD
Ga0325403_10002279	F069516	AGG	VFEARVINLCDRDIATNFGAVAGEVILVDSCAIIFIFCDFYFFF