Scaffold Ga0315286_10141258

Overview

Basic Information

• Taxon OID: 3300032342
• Scaffold ID: Ga0315286_10141258
• Source Dataset Name: Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2584
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment → Extremophilic Microbial Mat Communities From Usa And Mexico

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5096
  • Long. (^o): -110.3556
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005503	Metagenome / Metatranscriptome	398	Y
F007799	Metagenome	344	N
F016529	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315286_101412584	F005503	GGAG	MTTNEISLFVLMLIACILWALVSYSVGFKEGQREGYQRGRSVSRHISAKAVTK
Ga0315286_101412585	F007799	AGGCGG	VSFLDNYEDVATRIQRFWATCPDGKIHTSIMDINLEKGHVLVECRVYRHYEDQEPAGIDYAFGNVATYNVQMKKWFVEDTVTSAIGRCVGLVIGSDKRPTVQNMQQVERIDSQIVQDSAKDYDYWSTKHGDVASFQTREAAEEAGIPTLGIALDTIKQGLGGAQVAAAPICVHGHMIWREGTAKTGKGWGGYMCVEKVKAKQCAPAWYVLTSDGQWKPQV
Ga0315286_101412587	F016529	AGGAG	MPLLRFDCSICKKLYGDARQEHLITKGKELTEHEWFAQCAGCGSFSVKLVDDDLVAGL