NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10281191

Scaffold Ga0310345_10281191


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10281191 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1536
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000704Metagenome928Y
F000730Metagenome / Metatranscriptome917Y
F002744Metagenome / Metatranscriptome533Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_102811911F002744N/AGQPLVSNTVAPICGATVIYDTDGPNDVESYYTRPTNETAAATAVNTRTEGGSMTIQGGNEIRSLYTVVSGATATASQHDVGYSEFISPDFNTSMPYRVAIQPTYTGLGSAANAVTGGGGIMEYKMPRGKGIPLANNVTITNYYTNRDARTGASNFINFVRFSRT
Ga0310345_102811912F000704N/AMPHIDDRLEPSKVKSISVYDTSSYGMDLFLPFTDVGLTETSITFSTAVLTRDTEDSNQPMDDFPAVYSDTDSGILLNEGNDTAFSQTYSYNPDMTAIIYAIHLSFPAAVICSAFTNGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTGTGTSLHIFQRDVVETILVRKGNPIDILVELITVTTGTNTRQEGIVNLAPYIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSNLGQ
Ga0310345_102811913F000730N/AMVCISTRKTGCLILVNELIPAELVPLVWFSVIAVTVYVFFRVFSSTLKEKFRQTNLSRKKAEGSGHTDSQIDDLVNNAPRILNEINKTIAEQKAQGVSDDQMQGIYNKKKMLELVT

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