Scaffold Ga0310345

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10125224 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032278 Open in IMG/M

Scaffold ID

Ga0310345_10125224 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2272
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2272

Total Scaffold Genes

4 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7719

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F000730	Metagenome / Metatranscriptome	917	Y
F001606	Metagenome	664	N
F032307	Metagenome / Metatranscriptome	180	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_101252241	F032307	AGG	MVVQKLLLQEGLRQTKKYSVSVLGYDFIGLAMRLGLFLTVGVLIQAYFTATIQGGSWLNSIAGFFNIKFPDTLPEWLTKLFTTGYNGIAFWQILQVTAILLVIVEYMQYDRMLKEKDQKPNATS
Ga0310345_101252242	F000730	GAG	LVSEFIPPEIIPLVWFSCIAVTVYVFFRVFSSTLREKFKQTNLSRRQAEKGGNTDGQIDDLITNAPRILHEIDKQIAEQTAAGVSQEQMKGLYQKKQLLSLVADNQEVINIIGKPIIKKLLGFVKAI
Ga0310345_101252243	F000704	N/A	VAKMPHTNGEIEPSKVKSVSVYNVGDYGVDNFLPFTDVGLTETAITFSTSILTRDTEDSNQPMDDFPAVYSDTDSGILLNGGDNTAFSRTYSYNPDMTAIIYALHLHFPAAVICSAFTSGTLNVGALHLKITERSTNDRLLYENTFQSGAANLTDTGTSLHIFQQDVVETILVRKGNPIDILVELITVTTGTNTRQEGVVNLAPNIKTAVLKRFTPAGIALHLHADLSHADGVYKYTKNRVSSLGQ
Ga0310345_101252244	F001606	N/A	AETQLNTATSLSAPDPAHAFNAVIPYQMELGAFTTNQSLLTAFRIQSDDVAVEPKKFVLPNINTGDAAFTSVAAPALLAYPINTPLAGGEHLNFYAQALVANSVAPGVGATVLYDTISTNGAEQYYTRPSSETAAATAINTRTEGGSMTIQGGNEITGLYTVVSGATATASEHDVGYSEFISPDFNTSMPYRIAVQPTATGLGAAANAITGGGGIMQYNMPRGKGIPLANNVTITNYYTNRDARAGGASNFINFVRYSKN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310345_10125224

Overview

Ecosystem & Geography

Associated Families

Sequences