Scaffold Ga0310345_10109836

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10109836
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003091	Metagenome / Metatranscriptome	508	Y
F012582	Metagenome / Metatranscriptome	279	Y
F040145	Metagenome	162	Y
F055198	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_101098364	F040145	GAGG	MTKKEWLREKVFVDEYGRPYNLSDVPMTFMSRSESFKKQRFDKKKINELYHKDQTTIIMEGC
Ga0310345_101098366	F003091	AGGAG	MSMLPRKPITKPGEGKERQKHVSQDRYLEERYQISVGLKGPKRLEDEEFEDYKIRMRAENGLLKEYLRGVWVKNKD
Ga0310345_101098367	F012582	N/A	MLHWAEDNKIRTKRNGDYEIPQRNGVDWKSDFKFVTKLDSMLADGLDDKLKKKEMKMCNELYKFYSQIYIKDILRKK
Ga0310345_101098368	F055198	GAGG	MTDFESASCKVLGVILILLIVIMSLQLMGCACPIPEAPIEYEYIDDVKMENYA