Scaffold Ga0310345_10087216

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10087216
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100872163	F078831	GAG	MVQTNESIYGKHRAFTASQQNLVLPGAKSKYLEAISVTINGLQNGGSVPTIANALGLVNPLEIDVGGIPQIRVRLADMYAIDMLWLQHNPLTKISAGDNQEWVCNQIVYPCWFPPSRAEATLTATYAAVTNADNTEVSITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDIMAGVDSETIRTVQMQQVPFRGR
Ga0310345_100872164	F033842	AGGAG	MANGMNILKDLTSPTKLIDKAKLGMKGAAGYAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITNNAPGLGTVDVRDAIVLLPAETQAYQMLSKSNKQTHFINALSSYVTKIVLRRTGLNPKEIADKTEKLITPRTMLPSVL
Ga0310345_100872166	F040140	GAGG	MLSCKLSMPKFGKEFEDTGYDGSEHWKVLHDEVNKIECDFCKEKGVKLMRGLHDSVNLHLGKKALHPKDLDFALKHIVWSKKQLEPGLKCELC