Scaffold Ga0310345

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10076941 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032278 Open in IMG/M

Scaffold ID

Ga0310345_10076941 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2878
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2878

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7719

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F025142	Metagenome	203	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100769412	F025142	GAGG	MVGSIDMVGRDVEFRVKTGSRATLQLTVADSSGNAKDLSNTVTFATGLWKVWKPDGTLIINGTLTFTTRASGVVSYALLASDTVAANVGRWEGEVELKDASGNISEQTKSFTYFQEESF
Ga0310345_100769414	F064802	N/A	MSVIVLKNEESIRDLILFQKEKLLHEFVDPVSMLPQTLIPPLFVEITDDERRGIIRALRWVLADEDLFQRE
Ga0310345_100769415	F054103	N/A	MKIYFNANNKAGREALERCGVKNVVLSHKYSYANINKFQNKFDSIFIVPGTNGNVDKYHDFLKKKKEYYDFATQFDVFYKMDETLKYLEKERKNGIDWTLPVLQENYLQHISRLRPKSGDYVCLGEIHGKLETEDQIRKLPQNIKYHGLAKGKYIEKRPFLSLDTSGWISAAMSKKTEVWSGNSTYSVFFGEKGKNTRAITASVLERYKDNLDIVGIKKQDVLDGEYYSLMKVPFALLYIPMCKSLGIYDINFKR
Ga0310345_100769416	F001066	N/A	MVEEGIFRINPVGNKDFVVENKRKTVSPFNSAKHLKTANIPALCDQCIYRSIDDGGNGKCPKYEAGAVCAIRKDFINMINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVNTLLGIVKSINDLNSKIVVTEKTEYRQGDIEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310345_10076941

Overview

Ecosystem & Geography

Associated Families

Sequences