Scaffold Ga0310345_10061428

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10061428
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3215
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012859	Metagenome	276	Y
F014552	Metagenome	262	Y
F016735	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100614284	F012859	N/A	MVRNRKGLAPWSLSREAGIESATVDGTIQVPQSVQPVLDTGFVDEKGDWKGVKSSDKDFIAFLTDEAIANGASILTPDINPDGTWPLDMTGYNDLFIAVKPSNGGNFAIKAVMGPDSVAFANLSPVDAAATLRTSADTGGNFPSFYDVMNDAAEAMTADVWNIYMLQNRASDQKLLQFQITNNTGDISDIHTAFMRLV
Ga0310345_100614286	F016735	AGAAGG	MTDALFALVWVLSFGLYLLIYTYWIPLRTQEKIESWLMSEESNETLLASLGVITDQIRNQTLVDFEEVMIPQARKAAIDFWNGAMGNAAKELGKSEEGSQLSIMHNMAKELEGQPWYVQMLSSKLIPLINKAAEAHQGDATAEPMKRLGLRK
Ga0310345_100614287	F014552	N/A	LKLIGSVSSALLIFEYNGTSFILELTGLLMSLKNTKKYSLGTPSLMRGLDKGQECEVKFLTDPKPVETEHGSKFDIQVQLLSHPHESYSSLPKEGRRLTWRTNCHVVRVTIMDLFNNNTEDFQKDWYDCTWTISCKEDGNIWIDA