Scaffold Ga0310345_10055806

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10055806
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3370
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F045805	Metagenome / Metatranscriptome	152	Y
F051977	Metagenome / Metatranscriptome	143	Y
F077398	Metagenome / Metatranscriptome	117	N
F097505	Metagenome / Metatranscriptome	104	N
F105353	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100558061	F045805	N/A	NSVYSIGIPQPKRVIYGEGEVIWKAGKYKPGLIYGYSPIYSIWSKAMSLTHMDEYIRKYFDKMRPPRGMLVIASRNYETFRKSWDMLEQKATEDPYMIHPLLVESEKGGKNMAQWIDFTGSLKELEFMALRKELRQIIGAIYGVLPLYYGEMPSGWSQEGLQVTITNRAVTWSQDILRKAFLNKIARLLGVDDWELRLKAGEETDKLRELQTQSTEIQNMAAMQNMGFEVKRTHTGEFKVSKDPIINPMMMAQEEKPASKTSRGNAMGQKKENKQSFQGEPKRGRPSDPGGTNQGAPASGTGTTMSKKNYPDGITPDNFDIVKSILQSSLDFGWKKTKTVDELRSKAFMTVRDAREVVKSELESARRWDNDSKEKSPA
Ga0310345_100558062	F077398	AGGAGG	MTVKKNRQHKTVPEVTKATVKVKEGKVDVYTKAYNDTIKRAGSVKENIEKRAGNVYSADYGLIDETIDDIKKMSRKVSTGDYSANNVYLILQDALKKITLAEK
Ga0310345_100558063	F001235	GAG	MGTKLNVDPGSDIGKKLWDIHQADEYTHVDHYKEAICINCFTKDAASATIADICGECAGKRGREPLLATITQKMYGLCFFCGQYKFEIEQINARFCRSCHRKIANVTKEYNKKGGPMGSDPFWLAMRKKHGKDWKVIMSNNLGNKR
Ga0310345_100558064	F097505	N/A	MNWKRARKRLHCDCSIHDVVSNVLEYLIITPMFATAYLAVTVPWMLFVIKLDGEQFVDFVWQSVLVDLIVAYPVTKLILKLKPRIEKITSLRH
Ga0310345_100558066	F051977	GAG	MGTSIYVYETEQEYRRIYHRMDKEVMFSAPILDIFLKPDKKLWVVSKITKNKERPQLGRSIVHFVNGTVFEYSDGNERPVLKNSVVFNPKKGKVEFFPKKLRVAELEIRVDRFYGTPPNKKVILDQSKRFYDISRDRINFILKNKDGI
Ga0310345_100558067	F105353	N/A	MKLKSKCDCGKKLYGYGDGVHEIWLCYKCGKFVGTAGGDELFGIMAKTAPDIIMTMIYEKILTPIEHSIHGKKSNRRNKTFGR