Scaffold Ga0310345_10038397

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10038397
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4049
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F008691	Metagenome / Metatranscriptome	329	Y
F041246	Metagenome	160	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100383971	F008596	GGAG	MSGAWDIATATSLLTGVAKVQINGGNNLTKPTQATNLVEVVPYTVSSGAYTAGESIALTAYLDSHSVDLLPKRIIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSLSGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQ
Ga0310345_100383972	F003270	N/A	MARKRSRRRKAKRSGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVAFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAATIDRVGNKVIFGGAIGGFFDPPGNPGGYVSTANVTPNVLVQNRSQTNRAYATAQRNRGFVPSGGFDSSTGSAFR
Ga0310345_100383973	F008691	N/A	MVLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGVITRFVIPKSVTEGSIFNRFKSWFGYDQEEYEEEE
Ga0310345_100383974	F093971	GGTGG	MSENKKSKKDESENFIDTLKELLADPHQNEAWNDKFKATVRKYFDI
Ga0310345_100383978	F041246	AGG	MKYVIGITKRFSYTKSENHTRKGRKHHFRYEFDLESGKFRRVRISLFKAIYYKITFVFGLKSKKITNVYCKDCRKSYNCYVNFWDKDLSCPYC