NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310345_10038397

Scaffold Ga0310345_10038397


Overview

Basic Information
Taxon OID3300032278 Open in IMG/M
Scaffold IDGa0310345_10038397 Open in IMG/M
Source Dataset NameMarine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4049
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location NamePacific Ocean: North Pacific Subtropical Gyre
CoordinatesLat. (o)22.7719Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003270Metagenome496Y
F008596Metagenome331N
F008691Metagenome / Metatranscriptome329Y
F041246Metagenome160Y
F093971Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0310345_100383971F008596GGAGMSGAWDIATATSLLTGVAKVQINGGNNLTKPTQATNLVEVVPYTVSSGAYTAGESIALTAYLDSHSVDLLPKRIIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSLSGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQ
Ga0310345_100383972F003270N/AMARKRSRRRKAKRSGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVAFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAATIDRVGNKVIFGGAIGGFFDPPGNPGGYVSTANVTPNVLVQNRSQTNRAYATAQRNRGFVPSGGFDSSTGSAFR
Ga0310345_100383973F008691N/AMVLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGVITRFVIPKSVTEGSIFNRFKSWFGYDQEEYEEEE
Ga0310345_100383974F093971GGTGGMSENKKSKKDESENFIDTLKELLADPHQNEAWNDKFKATVRKYFDI
Ga0310345_100383978F041246AGGMKYVIGITKRFSYTKSENHTRKGRKHHFRYEFDLESGKFRRVRISLFKAIYYKITFVFGLKSKKITNVYCKDCRKSYNCYVNFWDKDLSCPYC

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