Basic Information | |
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Taxon OID | 3300032278 Open in IMG/M |
Scaffold ID | Ga0310345_10038397 Open in IMG/M |
Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4049 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003270 | Metagenome | 496 | Y |
F008596 | Metagenome | 331 | N |
F008691 | Metagenome / Metatranscriptome | 329 | Y |
F041246 | Metagenome | 160 | Y |
F093971 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310345_100383971 | F008596 | GGAG | MSGAWDIATATSLLTGVAKVQINGGNNLTKPTQATNLVEVVPYTVSSGAYTAGESIALTAYLDSHSVDLLPKRIIVPPVQAGLGTLINIVAPILEAYECNTGLQEGATSQFIVSGQAQVANTVAPLMGMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSLSGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQ |
Ga0310345_100383972 | F003270 | N/A | MARKRSRRRKAKRSGSKSIKSMLRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYAALDYLGKLKVAANILTGSLTGRVAFADQYNPSPSGQPRINPAGVINKWTGIGVAAKLYGKIGKSMKLPEAATIDRVGNKVIFGGAIGGFFDPPGNPGGYVSTANVTPNVLVQNRSQTNRAYATAQRNRGFVPSGGFDSSTGSAFR |
Ga0310345_100383973 | F008691 | N/A | MVLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGVITRFVIPKSVTEGSIFNRFKSWFGYDQEEYEEEE |
Ga0310345_100383974 | F093971 | GGTGG | MSENKKSKKDESENFIDTLKELLADPHQNEAWNDKFKATVRKYFDI |
Ga0310345_100383978 | F041246 | AGG | MKYVIGITKRFSYTKSENHTRKGRKHHFRYEFDLESGKFRRVRISLFKAIYYKITFVFGLKSKKITNVYCKDCRKSYNCYVNFWDKDLSCPYC |
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