Scaffold Ga0310345_10035144

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10035144
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4228
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020469	Metagenome	224	Y
F023247	Metagenome	211	Y
F051571	Metagenome	144	Y
F096262	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1003514410	F023247	GGA	MTLSTGPTLNFFGDHVFAWSGQEDLTAGVTTLLDFISPNRFYSVVTNVSFDYSGCSAGDALSWTVQGNGEALHVSKFLIIDAGVGPQFPNLYYTIPPNTGMKILAQGPTGKMTVVVEGKEVQ
Ga0310345_1003514412	F096262	N/A	SGVSQISQISMGVSSVATGADFCSGFKLTGTALQEGDATFMGPAIAQAASGGTGVANCVVQEKTALGVTSGNTLDIQMAVTTAATIDASCTITFE
Ga0310345_100351444	F051571	N/A	MVRRRRASRRKAPRQFGINVIETGAALALLEQTSAGSAMKSFIAGEVNTGLTTLSKAAKSNKAAITKTLIGAFLAKAAVKSFSRGSPILASLGPIKVRA
Ga0310345_100351446	F020469	AGGA	MEITTVSLMLYFAAWTVFYALLSKYIARLSKDEWVRWAKSRESDEELIEILESVIDEIESRMHEMLENFQSSFFGSLGAASKKMDEATGQSTIKAITKDNPIMGLVAEMLMKRSGLEGLIKTQNSDEIGVKQPQKSLRLGLK