Scaffold Ga0310345_10033832

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10033832
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4305
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y
F015879	Metagenome	251	Y
F097502	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100338321	F008755	N/A	VSKINKSRLARDLWRKVFSDNLINLSDGDARKQVVRDFLNDPVNKKMGWKSKDARFFRLGFNKVAKENNFNVMNIGVTPEPSRNKTQKGSMSINVKTKQKNPPPMGESIKPTTPAEKMSGAIPQTPTLENQQAQATYYTAQSVGQIFDTVVNIISARTGCTPLSQNERIALGEAWMPIFAEYFSGENSKWVMVAVITIPIALRILSEIQQKKKKKELEEQYGIKDIP
Ga0310345_100338323	F005148	GGAGG	LKHTKKVEALRRNLPESEEVECKNCGLKFCDEWNLLSLQTLDLCMLCANRKLDKQTIESAYDVK
Ga0310345_100338326	F015879	GGAGG	MKKDDIIIITCNVCGAMSHAIRKQVPKGYYVKDEFVLCRPCFGDLK
Ga0310345_100338329	F097502	N/A	MNHPDLVNYGQPEPFIDNKTTVVLHCVGCGKFKDKRSRSKKCTVCLFHMTTEEAIERGFIQSPHQNFLPPK