Scaffold Ga0310345

Basic Information
Taxon OID	3300032278 Open in IMG/M
Scaffold ID	Ga0310345_10033280 Open in IMG/M
Source Dataset Name	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300032278 Open in IMG/M

Scaffold ID

Ga0310345_10033280 Open in IMG/M

Source Dataset Name

Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4339
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (90.91%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

4339

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (90.91%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location
Location Name	Pacific Ocean: North Pacific Subtropical Gyre
Coordinates	Lat. (^o)	22.7719	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean: North Pacific Subtropical Gyre

Coordinates

Lat. (^o)

22.7719

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F066859	Metagenome / Metatranscriptome	126	N
F068933	Metagenome	124	N
F078831	Metagenome	116	N
F081448	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_100332802	F081448	AGG	VKALDVLTDIIKNKNLAKEYALQESKDLRVLSPKKDTALACLLSGIESVETIPTWVKTSWFNWIFYAMRMISDKEVDALAESMAKGLEEYKMAYFSQEFIESLPKEKRPAAEALLQPHLLKLKGSHTTMEETLKEWRI
Ga0310345_100332805	F068933	GAG	MSKLDLLKQLHRELLMPKALPGMKGTIGRPTDVIPVHAAGQLKGYWKNVKHKPATGFQVSKKNKFKD
Ga0310345_100332806	F033842	AGGAG	MANGMNILKDVTNPGKLVDRAKLGMKGAAGYAAATVALEAGTQLLERFVLDPHLPAAANVMNTVITTNAPGLGTVDVRDAIVLLPAETQAYQMLSKSNKQTHFINALSSYVTKIVLRRTGLNPKEIADKTEKIITPRTMLPSVM
Ga0310345_100332807	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSVTINGLQNGGSVPTIANALGLVNPLEIDVGGIPQIRVRLADMYAMDMLWLQHNPLTKISAGDNQEWVCNQIVYPCWFPPSRAEATLTATYAAVTNADNTEVSITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIYNGQMFNALEESPATTGILDNYRWLSLAKEPLPAGTRVQTDIMAGVDSETIRTVQVQQVPFRGR
Ga0310345_100332808	F066859	AGG	LVHELPDENGRVQTQINTSRAGYYVSNFDTTESVTLTPQGGGTIDIVLPPGAKVAIPDKIGLVAQGGNSSRNYIFLMWTAGYAN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0310345_10033280

Overview

Ecosystem & Geography

Associated Families

Sequences