Scaffold Ga0310345_10030435

Overview

Basic Information

• Taxon OID: 3300032278
• Scaffold ID: Ga0310345_10030435
• Source Dataset Name: Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4536
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha

Source Dataset Sampling Location

• Location Name: Pacific Ocean: North Pacific Subtropical Gyre
• Coordinates
  • Lat. (^o): 22.7719
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F077398	Metagenome / Metatranscriptome	117	N
F097505	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0310345_1003043510	F097505	AGGA	MDWKRARKRLHCDCSIHDVVSSVLEYFIITPMFATAYLAVTVPWMIFVIKLDGDQFADFVWQSVLVDLIVAYPVTKLILKLKPRIEKITSLRH
Ga0310345_100304358	F077398	AGGAGG	MEKKKAKVQHKKPEVVKATVQVKDKKVDVYTQAYNDTIKRAGSVKENIEKRAGSVYTANYKLIDDTIEEIKKMSRKVCSNDYSANNVYIILQDAYKKVVLAEK
Ga0310345_100304359	F001235	GAG	MGTKLNVDVGSDIGKKLWDKHQADEYTHVDNYKEALSINCFSKDATSATIADICGECAGKRGREPLLATIQQKMYGLCFFCGKYQFNIEQINARFCRKCHRGIANVTKEYNKKGGMMGADPFWIAMRKKHGKDWKVIMNENLGNKR