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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300032278 Open in IMG/M |
| Scaffold ID | Ga0310345_10026871 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4833 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Comprehensive Metagenome And Single Cell Genome Sequencing From The Open Ocean Community Of North Pacfic Subtropical Gyre, Station Aloha |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean: North Pacific Subtropical Gyre | |||||||
| Coordinates | Lat. (o) | 22.7719 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000730 | Metagenome / Metatranscriptome | 917 | Y |
| F032306 | Metagenome | 180 | Y |
| F033074 | Metagenome | 178 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310345_100268713 | F033074 | AGGTGG | MPHLEPSGNGLRVPSQIKFLPTANVLDYGEDLALHLTSVGFTEQAITFSTAAITRSLDEGGQPLDALPHVYSDTDDGLLLHEGNDTAFDVDYVFNPDMVATVLKVSINVCMALNVSAYTSGNFNLGDLTVTVTEQGASNRNIYTNTFASGAANLAATDTSLHWFTVDIVEPFQVFPNQPIKINLSLASTLGTGTSQAGIVSVAPYVNTAVMKSFNESAVIFHIHAGLGHADDIFRFNMNRVKSEAFNG |
| Ga0310345_100268714 | F000730 | GAGG | MAEFIAPEIIPFIWFGGIAITIYVFFHKFSDVIKEKFRQTNLTRRKEERSGNTDGQVDDLISGAPRMLNEVNKIITEQTAAGVPMEQMKGLLQKKQMLELVSNNAEVINIIGKPILKKALGFMRSI |
| Ga0310345_100268718 | F032306 | GGAG | MSFSQNLGHVSQLGEIRKLPKLKLASTLNTWVTCPVCRGGGQTVTPHQNGQVDLMICPHCKGKKKYFNGGLIG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |